Structure of PDB 6rv5 Chain A Binding Site BS03

Receptor Information

>6rv5 Chain A (length=412) Species: 465817 (Erwinia tasmaniensis Et1/99) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

FNYKPTPWTRADALKVHSDDPTTTQPLVDVAFPVMSEEVFIWDTMPLRDF
DGDIVSVNGWCVIFTLTADRNTNNPDFQDENGNYDIKRDWEDRHGRARIC
YWYSRTGKDWIFGGRVMAEGVSPTTREWAGTPILLNDEGDIDLYYTCVTP
GATIAKVRGKIVTSDEGVSLEGFQHVKSLFSADGKIYQTEEQNAYWNFRD
PSPFIDKNDGKLYMLFEGNVAGSRGTHEITQEDMGSVPPGYENVGGARYQ
VGCIGLAVAKDLSGDEWEILPPLITAVGVNDQTERPHFVFQEGKYYLFTI
SHKYTFADNLTGPDGVYGFVSNQLTGPYTPMNSSGLVLGNPSSQPFQTYS
HYVMPNGLVTSFIDSVPWEGEKFRIGGTEAPTVKILLKGDRSFVVDSFDY
GYIPAMKDIILK

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6rv5 Chain A Residue 513 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6rv5 The Structure of Sucrose-Soaked Levansucrase Crystals fromErwinia tasmaniensisreveals a Binding Pocket for Levanbiose.
Resolution	1.58 Å
Binding residue (original residue number in PDB)	D140 E141
Binding residue (residue number reindexed from 1)	D137 E138
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.4.1.10: levansucrase.

Gene Ontology

	Molecular Function
GO:0016757	glycosyltransferase activity
GO:0046872	metal ion binding
GO:0050053	levansucrase activity

	Biological Process
GO:0009758	carbohydrate utilization

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Molecular Function

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Biological Process

External links

PDB	RCSB:6rv5, PDBe:6rv5, PDBj:6rv5
PDBsum	6rv5
PubMed	31877648
UniProt	B2VCC3

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