Structure of PDB 6q8r Chain A Binding Site BS03

Receptor Information

>6q8r Chain A (length=129) Species: 9031 (Gallus gallus)

KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL

Ligand information

• Ligand ID: AR
• InChI: InChI=1S/Ar
• InChIKey: XKRFYHLGVUSROY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  CACTVS 3.341
  OpenEye OEToolkits 1.5.0: [Ar]
• Formula: Ar
• Name: ARGON
• PDB chain: 6q8r Chain A Residue 219

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6q8r Gas-sensitive biological crystals processed in pressurized oxygen and krypton atmospheres: deciphering gas channels in proteins using a novel soak-and-freeze methodology
• Resolution: 1.7 Å
• Binding residue (original residue number in PDB): K1 V2
• Binding residue (residue number reindexed from 1): K1 V2
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 3.2.1.17: lysozyme.

Gene Ontology

Molecular Function

• GO:0003796 lysozyme activity
• GO:0005515 protein binding
• GO:0016231 beta-N-acetylglucosaminidase activity
• GO:0016798 hydrolase activity, acting on glycosyl bonds
• GO:0042802 identical protein binding

Biological Process

• GO:0016998 cell wall macromolecule catabolic process
• GO:0031640 killing of cells of another organism
• GO:0042742 defense response to bacterium
• GO:0050829 defense response to Gram-negative bacterium
• GO:0050830 defense response to Gram-positive bacterium

Cellular Component

• GO:0005576 extracellular region
• GO:0005615 extracellular space
• GO:0005737 cytoplasm
• GO:0005783 endoplasmic reticulum

External links

• PDB: RCSB:6q8r, PDBe:6q8r, PDBj:6q8r
• PDBsum: 6q8r
• UniProt: P00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)