Structure of PDB 6om4 Chain A Binding Site BS03

Receptor Information

>6om4 Chain A (length=345) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MDYILGRYVKIARYGSGGLVGGGGKEQYVENLVLWENIIKTAYCFITPSS
YTAALETANIPEKDFSNCFRFLKENFFIIPSEYNNNNRYSRNFLHYQSYG
ANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENT
NLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKV
PEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPG
KTGCYECQKVVADLYGAEKENIDHKIKLINSRFKPATFAPVNNVAAALCA
ADVIKFIGKYSEPLSLNKRIGIWSDEIKIHSQNMGRSPVCSVCGN

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6om4 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6om4 Biosynthesis of the RiPP trojan horse nucleotide antibiotic microcin C is directed by theN-formyl of the peptide precursor.
Resolution	1.7 Å
Binding residue (original residue number in PDB)	C257 C260 C343 C346
Binding residue (residue number reindexed from 1)	C254 C257 C340 C343
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0004792	thiosulfate sulfurtransferase activity
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0008641	ubiquitin-like modifier activating enzyme activity
GO:0016779	nucleotidyltransferase activity
GO:0046872	metal ion binding

	Cellular Component
GO:0005737	cytoplasm

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6om4, PDBe:6om4, PDBj:6om4
PDBsum	6om4
PubMed	30881667
UniProt	Q47506

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