Structure of PDB 6m0e Chain A Binding Site BS03

Receptor Information
>6m0e Chain A (length=477) Species: 395963 (Beijerinckia indica subsp. indica ATCC 9039) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YPIPTPHSGQAYDPFADFTAKWTRANARQIKAQSHVPVSPDQNSLPLNLT
MPDIPADFPQTNPDVWVWDTWPLADVHGNQLSFQGWEVIFSLTADPHAGY
VFDDRHVHARIGFFYRKAGIPANQRPIDGGWIYGGHLFPDGSSVKVFGNV
PMTQNAEWSGGARFVKNNNVSLYYTATSFNRNAQGGNITPPIAIISRADG
QIQADDKHVWFTGFDQHLPLLAPDGKYYQTGQQNEFFSFRDPYVFLDPAH
PGKTFMVFEGNTAVQRGSRSCTEADLGYSPNDPNKEDLNAVMDSGAIYQM
ANVGLAVATNDELTQWKFLPPILSGNCVNDQTERPQIYLKDGKYYLFTIS
HRTTYAAGVDGPDGVYGFVGDGIRSDFIPLNGLSGLTLGNPTDLYQPAGA
PYALNPNQNPRTFQSYSHYVMPGGLVESFIDAIGPRRGGALAPTVKININ
GTSTILDRTYGNAGLGGYGDIPANLPA
Ligand information
Ligand IDBDF
InChIInChI=1S/C6H12O6/c7-2-6(11)5(10)4(9)3(8)1-12-6/h3-5,7-11H,1-2H2/t3-,4-,5+,6-/m1/s1
InChIKeyLKDRXBCSQODPBY-ARQDHWQXSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C]1(O)OC[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@@]1(O)OC[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C1[C@H]([C@H]([C@@H]([C@](O1)(CO)O)O)O)O
ACDLabs 10.04OC1C(O)(OCC(O)C1O)CO
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)(CO)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-fructopyranose;
beta-D-fructose;
D-fructose;
fructose
ChEMBL
DrugBank
ZINCZINC000003861095
PDB chain6m0e Chain A Residue 606 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6m0e Crystal structure of a glycoside hydrolase family 68 beta-fructosyltransferase from Beijerinckia indica subsp. indica in complex with fructose.
Resolution1.35 Å
Binding residue
(original residue number in PDB)		T50 K52 S314 D319 S368 N370
Binding residue
(residue number reindexed from 1)		T19 K21 S270 D275 S324 N326
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) L78 P292 L349
Catalytic site (residue number reindexed from 1) L47 P248 L305
Enzyme Commision number 2.4.1.10: levansucrase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046872 metal ion binding
GO:0050053 levansucrase activity
Biological Process
GO:0009758 carbohydrate utilization

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6m0e, PDBe:6m0e, PDBj:6m0e
PDBsum6m0e
PubMed32752982
UniProtB2IF78

[Back to BioLiP]