Structure of PDB 6l7h Chain A Binding Site BS03

Receptor Information
>6l7h Chain A (length=453) Species: 49827 (Glycyrrhiza glabra) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSIAPHPVVHVALLPSAGMGHLTPFLRLASLLLHQHCHVTLITPQPTVSK
AEEDLLSRFLSAFPQVNQLHFHLPPTDPFFLQFASIRSSSHLLTPLLSSL
TPPLSSFIYDMTLISPLLPIAESLGVPHYILFTSSATMFSFFSYFPTLAK
SESFPGKLDFVEIPGVSVSSIPRSSIPPPLLVPNSLFGKLFMEDSPKLKK
LHGVLVNTFEGIEKLSLEALNGGKVVKGLPPVYGVGPFVPCEFEKVETIS
EWLDEQPSGSVVYVSFGSRTAMGREQLREVGDGLVKSGWRFLWVVKDKIV
DRAEEEGLDGVLGFELVERMVKEKKGLVVKEWVDQSEILGHKAVGGFVSH
CGWNSVVEAAWFGVKILGWPLHGDQKINAEVVAKGGWGVWKEGWDWEGER
LVKGEEIGEAIREVMNDESLVMKATQVKKDARKAISVGGGCEVALQKLME
VWK
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain6l7h Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6l7h Functional Characterization and Structural Basis of an Efficient Di-C-glycosyltransferase fromGlycyrrhiza glabra.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		D89 P190 R285 T286 H388 G389
Binding residue
(residue number reindexed from 1)		D77 P178 R269 T270 H372 G373
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Feb 22 13:33:58 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6l7h', asym_id = 'A', bs = 'BS03', title = 'Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6l7h', asym_id='A', bs='BS03', title='Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008194,0035251', uniprot = '', pdbid = '6l7h', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008194,0035251', uniprot='', pdbid='6l7h', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>