Structure of PDB 6kd7 Chain A Binding Site BS03

Receptor Information
>6kd7 Chain A (length=327) Species: 592029 (Nonlabens dokdonensis DSW-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNTLKSLRTTFLEELKSKVTATEPAGLYDPVHYILDLGGKRLRPLLTLMS
AEMYGATAKDAMNAAIAVEVFHNFTLLHDDIMDAADLRRGKETVHKKWDV
NTGILTGDAMLIMAYRLFEDYDKDKFYQLNKVFSRTALEVCEGQQHDVDF
ETRDDVSVPEYLNMIKLKTSVLVGCALQMGAIIAGVDEKEQELIYDYGIN
LGLAFQLMDDYLDAFGDPETFGKEVGGDIRENKKTYLYLKSIENNDCATE
LKEWFALHFENMTEEQIDEKKETVKVFFEQSGGAKATLDAIESYTQKALK
NIEELSIAPESKKQLTDFSLQLMGRKS
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain6kd7 Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6kd7 Crystal structure of geranylgeranyl pyrophosphate synthase (crtE) from Nonlabens dokdonensis DSW-6.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		T75 M82 Q144
Binding residue
(residue number reindexed from 1)		T75 M82 Q144
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) K40 F74 D79 D83 R88 D147 K168 F205 D209 D210
Catalytic site (residue number reindexed from 1) K40 F74 D79 D83 R88 D147 K168 F205 D209 D210
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004659 prenyltransferase activity
GO:0016740 transferase activity
Biological Process
GO:0008299 isoprenoid biosynthetic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:6kd7, PDBe:6kd7, PDBj:6kd7
PDBsum6kd7
PubMed31427080
UniProtL7W5I6

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