Structure of PDB 6fwj Chain A Binding Site BS03

Receptor Information
>6fwj Chain A (length=347) Species: 657309 (Bacteroides xylanisolvens XB1A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LGTELDYDTFCFYYDWYGSEAIDGQYRHWAHAIAPDPNGGSGQNPGTIPG
TQESIASNFYPQLGRYSSSDPNILTKHMDMFVMARTGVLALTWWNEQDET
EAKRIGLILDAADKKKIKVCFHLEPYPSRNVQNLRENIVKLITRYGNHPA
FYRKDGKPLFFIYDSYLIEPSEWEKLLSPGGSITIRNTAYDALMIGLWTS
SPTVQRPFILNAHFDGFYTYFAATGFTYGSTPTNWVSMQKWAKENGKIFI
PSVGPGYIDTRIRPWNGSVIRTRTDGQYYDAMYRKAIEAGVSAISITSFN
EWHEGSQIEPAVPYTSSEFTYLDYENREPDYYLTRTAYWVGKFRESK
Ligand information
Ligand IDE9K
InChIInChI=1S/C7H13NO3/c9-2-3-1-4-5(8-4)7(11)6(3)10/h3-11H,1-2H2/t3-,4-,5-,6-,7-/m1/s1
InChIKeyJACJTGDBUDQHPY-NYMZXIIRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C1C(C(C(C2C1N2)O)O)CO
CACTVS 3.385OC[C@H]1C[C@H]2N[C@H]2[C@@H](O)[C@@H]1O
CACTVS 3.385OC[CH]1C[CH]2N[CH]2[CH](O)[CH]1O
OpenEye OEToolkits 2.0.6C1[C@@H]([C@H]([C@@H]([C@H]2[C@@H]1N2)O)O)CO
FormulaC7 H13 N O3
Name(1~{R},2~{R},3~{R},4~{R},6~{R})-4-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3-diol
ChEMBL
DrugBank
ZINC
PDB chain6fwj Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6fwj An Epoxide Intermediate in Glycosidase Catalysis.
Resolution1.04 Å
Binding residue
(original residue number in PDB)
Y46 W126 H154 E156 Y195 Y252 E333 E336
Binding residue
(residue number reindexed from 1)
Y14 W94 H122 E124 Y163 Y220 E301 E304
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004559 alpha-mannosidase activity
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6fwj, PDBe:6fwj, PDBj:6fwj
PDBsum6fwj
PubMed32490192
UniProtD6D1V7

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