Structure of PDB 6ffl Chain A Binding Site BS03

Receptor Information

>6ffl Chain A (length=383) Species: 264462 (Bdellovibrio bacteriovorus HD100)

VRIQIWHQMIYGHRQVLAEALEKFEKENPGITVQATYRETEELRSSFQSA
AMGGSGPELVYGPSDQVGPFATMGIVRPLDEVLGSDYFQNFDPLAAPVYD
GKHYMIGDAVGNHLMLLYNKKFITTPPKNSQELIELGKKMTVDTNGDGKI
DRWGLVFNYTEPFFFAPFIPAFGEAFLKADGVTPNLNTTALKDTFQFILK
LRDQDKIIPKECDYETANALFKENKAAMLINGDWSWGDYQQAKVDFGIAR
IPMISETGKWPSPLVGTKGYSLNANMKSEAHYEAAVKLLKYLTSTPVQLL
FAEKVGVLPSNLQARESDIVKNNPLLKISADIMEVGTPMPVTPEVRAVWD
SLRIQYQKVLAGSLQPQAAAEQAQITAEQQIRD

Ligand information

• Ligand ID: GLC
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
• InChIKey: WQZGKKKJIJFFOK-DVKNGEFBSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  CACTVS 3.341: OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: alpha-D-glucopyranose;
  alpha-D-glucose;
  D-glucose;
  glucose
• ChEMBL: CHEMBL423707
• ZINC: ZINC000003861213
• PDB chain: 6ffl Chain B Residue 3

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ffl Structural and functional characterization of a maltose/maltodextrin ABC transporter comprising a single solute binding domain (MalE) fused to the transmembrane subunit MalF.
• Resolution: 1.707 Å
• Binding residue (original residue number in PDB): E43 P65 D67 E163 P164 F165 M341 R348 W351 R355
• Binding residue (residue number reindexed from 1): E41 P63 D65 E161 P162 F163 M339 R346 W349 R353
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0015144 carbohydrate transmembrane transporter activity

Biological Process

• GO:0008643 carbohydrate transport

External links

• PDB: RCSB:6ffl, PDBe:6ffl, PDBj:6ffl
• PDBsum: 6ffl
• PubMed: 30193862
• UniProt: Q6MNM0