Structure of PDB 6dlh Chain A Binding Site BS03

Receptor Information
>6dlh Chain A (length=704) Species: 264023 (Mariniflexile fucanivorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVPDPNQGLRAEWMRGALGMLWLPERTFNGNIEGIRIDDFLTQIKDIRTV
DYVQLPLTSPNIFSPTHVAPHPIIESLWQGDTDANGDPINLVAPRESVDD
PLLSWLKALRAAGLRTEIYVNSYNLLARIPEDTQADYPDVSARWMEWCDT
NTEAQAFINSQTYHEGNGRRKYMFCYAEFILKEYAQRYGDLIDAWCFDSA
DNVMEDECGDDPASEDVNDQRIYQAFADACHAGNPNAAIAFNNSVGDREG
NPFTSATLFDDYTFGHPFGGAGNMVVPEALYTYNHDLVVFMQTNNGYAFR
DDTRTWNDNVVAHFFPKQSTTSWNAGNTPCLTDEQFVEWTSTGIVNGGGI
TWGTPLVRTNLENAPVLTLQPYALNQFELTDTYLKEFQSPGKPNWSRQYT
ILPAIYPGQPYSHNLVEGVDFWDPEGVGITGLTASGTLPAWLTISQTATG
TWTLSGTPPVSEASNYTFELMAQDSDGVTNREVKLEVISHPAGFTNPGDG
TPVWFSNPMVLAKATALKDYGSLLKLGVDFYDFEGDVLTITKTSGPDWLV
LTQNSDDTWRLSGMPTAADAGENSFTFNVSDGILSSDTEIKITVDHVAGF
TNLGNGAPVWSSPILNLTDGKGSFAYNYTLQLGTDYYDFEGDALTITKTS
GPDWLTIQQTDANSWKLSGTPINSDAGENSFTFNLSDDTNSTTAEILINV
IATI
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6dlh Chain A Residue 806 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6dlh Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to alpha-l-fucosidases from GH29.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		G528 D560 E562 D564 D609
Binding residue
(residue number reindexed from 1)		G500 D532 E534 D536 D581
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function
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Cellular Component
External links
PDB RCSB:6dlh, PDBe:6dlh, PDBj:6dlh
PDBsum6dlh
PubMed30282808
UniProtQ08I46

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