Structure of PDB 5zdn Chain A Binding Site BS03

Receptor Information
>5zdn Chain A (length=192) Species: 1906 (Streptomyces fradiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFAFGAVVERRDELDGRPWISYPVRVVADTPELVAVHLSHGTRLTFGDDP
FSWGPHPWQLFGDRWQSAGILQLHRPGRGHSVWVLRDADTGAFREWYVNV
EAPWRRTPTGFSTLDHEIDLVVPADSRTFRWKDVEKFEERARIGHFSPEE
ATAIRAEAADVAREIAAGEQWWDTRWSRWEPPAGWNALLQSF
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5zdn Chain A Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5zdn Biochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl ( S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis.
Resolution2.02 Å
Binding residue
(original residue number in PDB)		N109 D125 D129
Binding residue
(residue number reindexed from 1)		N99 D115 D119
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.1.-
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0017000 antibiotic biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5zdn, PDBe:5zdn, PDBj:5zdn
PDBsum5zdn
PubMed30010320
UniProtD2SNF7|FOMD_STRFR Cytidylyl-2-hydroxypropylphosphonate hydrolase (Gene Name=fomD)

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