Structure of PDB 5ww5 Chain A Binding Site BS03

Receptor Information
>5ww5 Chain A (length=161) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MSARRTESDIQGFHATPEFGGNLQKVLVDLIELSLQGKQAHWNVVGSNFR
DLHLQLDELVDFAREGSDTIAERMRALDAVPDGRSDTVAATTTLPEFPAF
ERSTADVVDLITTRINATVDTIRRVHDAVDAEDPSTADLLHGLIDGLEKQ
AWLIRSENRKV
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5ww5 Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5ww5 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis
Resolution2.04 Å
Binding residue
(original residue number in PDB)
N48 D51
Binding residue
(residue number reindexed from 1)
N48 D51
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0008199 ferric iron binding
GO:0016722 oxidoreductase activity, acting on metal ions
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5ww5, PDBe:5ww5, PDBj:5ww5
PDBsum5ww5
PubMed28418062
UniProtA0QXB7

[Back to BioLiP]