Structure of PDB 5vyq Chain A Binding Site BS03

Receptor Information

>5vyq Chain A (length=235) Species: 1310114 (Mycobacterium tuberculosis CAS/NITR204)

QGHMVTILILTDNVHAHALAVDLQARHGDMDVYQSPIGQLPGVPRCDVAE
RVAEIVERYDLVLSFHCKQRFPAALIDGVRCVNVHPGFNPYNRGWFPQVF
SIIDGQKVGVTIHEIDDQLDHGPIIAQRECAIESWDSSGSVYARLMDIER
ELVLEHFDAIRDGSYTAKSPATEGNLNLKKDFEQLRRLDLNERGTFGHFL
NRLRALTHDDFRNAWFVDASGRKVFVRVVLEPEKP

Ligand information

• Ligand ID: EP1
• InChI: InChI=1S/C9H20N2O4S/c12-8-7-11-5-3-10(4-6-11)2-1-9-16(13,14)15/h12H,1-9H2,(H,13,14,15)
• InChIKey: OWXMKDGYPWMGEB-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: OCCN1CCN(CCC[S](O)(=O)=O)CC1
  OpenEye OEToolkits 1.5.0: C1CN(CCN1CCCS(=O)(=O)O)CCO
  ACDLabs 10.04: O=S(=O)(O)CCCN1CCN(CCO)CC1
• Formula: C9 H20 N2 O4 S
• Name: 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID
• ZINC: ZINC000019370281
• PDB chain: 5vyq Chain A Residue 308

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5vyq Biochemical Investigation of Rv3404c from Mycobacterium tuberculosis.
• Resolution: 1.6 Å
• Binding residue (original residue number in PDB): D206 D207 F208 R209
• Binding residue (residue number reindexed from 1): D209 D210 F211 R212
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.1.2.-

Gene Ontology

Molecular Function

• GO:0004479 methionyl-tRNA formyltransferase activity
• GO:0016740 transferase activity
• GO:0016742 hydroxymethyl-, formyl- and related transferase activity
• GO:0042803 protein homodimerization activity

Biological Process

• GO:0006413 translational initiation
• GO:0009058 biosynthetic process
• GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA

Cellular Component

• GO:0005829 cytosol

External links

• PDB: RCSB:5vyq, PDBe:5vyq, PDBj:5vyq
• PDBsum: 5vyq
• PubMed: 28665588
• UniProt: P9WKZ3|SUGFT_MYCTU dTDP-4-amino-4,6-dideoxyglucose formyltransferase (Gene Name=Rv3404c)