Structure of PDB 5vdc Chain A Binding Site BS03

Receptor Information
>5vdc Chain A (length=117) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NNYCDFCLGDSKINKKTGQPEELVSCSDCGRSGHPSCLQFTPVMMAAVKT
YRWQCIECKCCNICGTSENDDQLLFCDDCDRGYHMYCLTPSMSEPPEGSW
SCHLCLDLLKEKASIYQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5vdc Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5vdc Histone-binding of DPF2 mediates its repressive role in myeloid differentiation.
Resolution1.6 Å
Binding residue
(original residue number in PDB)		C76 C79 C102 C105
Binding residue
(residue number reindexed from 1)		C76 C79 C102 C105
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5vdc, PDBe:5vdc, PDBj:5vdc
PDBsum5vdc
PubMed28533407
UniProtQ92785|REQU_HUMAN Zinc finger protein ubi-d4 (Gene Name=DPF2)

[Back to BioLiP]