Structure of PDB 5uw5 Chain A Binding Site BS03

Receptor Information
>5uw5 Chain A (length=696) Species: 39387 (Gypsophila vaccaria) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PLHYPPVRRDETVVDDYFGVKVADPYRWLEDPNSEETKEFVDNQEKLANS
VLEECELIDKFKQKIIDFVNFPRCGVPFRRANKYFHFYNSGLQAQNVFQM
QDDLDGKPEVLYDPNLREGGRSGLSLYSVSEDAKYFAFGIHSGLTEWVTI
KILKTEDRSYLPDTLEWVKFSPAIWTHDNKGFFYCPYPPNQEARYHFLGT
DQSEDILLWRDLENPAHHLKCQITDDGKYFLLYILDGCDDANKVYCLDLT
KLPNGLESFAPFMKLIDSFDASYTAIANDGSVFTFQTNKDAPRKKLVRVD
LNNPSVWTDLVPESKKDLLESAHAVNENQLILRYLSDVKHVLEIRDLESG
ALQHRLPIDIGSVDGITARRRDSVVFFKFTSILTPGIVYQCDLKNDPTQL
KIFRESVVPDFDRSEFEVKQVFVPSKDGTKIPIFIAARKGISLDGSHPCE
MHGYGGFGINMMPTFSASRIVFLKHLGGVFCLANIRGGGEYGEEWHKAGF
RDKKQNVFDDFISAAEYLISSGYTKARRVAIEGGSNGGLLVAACINQRPD
LFGCAEANCGVMDMLRFHKFTLGYLWTGDYGCSDKEEEFKWLIKYSPIHN
VRRPWEQPGNEETQYPATMILTADHDDRVVPLHSFKLLATMQHVLCTSLE
DSPQKNPIIARIQRKAAAYGRATMTQIAEVADRYGFMAKALEAPWI
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain5uw5 Chain A Residue 803 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5uw5 Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.
Resolution2.94 Å
Binding residue
(original residue number in PDB)		A717 E719
Binding residue
(residue number reindexed from 1)		A690 E692
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) Y481 S562 D653 A695
Catalytic site (residue number reindexed from 1) Y454 S535 D626 A668
Enzyme Commision number 3.4.21.-
3.4.21.26: prolyl oligopeptidase.
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0046872 metal ion binding
GO:0070012 oligopeptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5uw5, PDBe:5uw5, PDBj:5uw5
PDBsum5uw5
PubMed28584123
UniProtR4P353

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