Structure of PDB 5uiv Chain A Binding Site BS03

Receptor Information

>5uiv Chain A (length=225) Species: 237561 (Candida albicans SC5314)

TSARGQLILIEGLDRSGKSTQASILSTKLSPSKLIKFPDRSTPIGKLINE
YLTNKSFTLSDQAAHLLFSANRWELSQQIQDLLNQGYFIILDRYIYSGIA
YTLAKNDFHDETISQGKNKQQLNNIDWLLSPDKGLPKPDLTLFLTLDLEE
ISKRKGWGDERYELQQFQAKVKQCFLEILDTNKDPTIRIVDVGGKTIDQV
TTQLWEIIETNKNHELINDSIQFIT

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 5uiv Chain A Residue 304

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5uiv The Structure of Thymidylate Kinase from Candida albicans Reveals a Unique Structural Element.
• Resolution: 2.45 Å
• Binding residue (original residue number in PDB): D13 G155 E162
• Binding residue (residue number reindexed from 1): D14 G156 E163
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.7.4.9: dTMP kinase.

Gene Ontology

Molecular Function

• GO:0000166 nucleotide binding
• GO:0004550 nucleoside diphosphate kinase activity
• GO:0004798 thymidylate kinase activity
• GO:0005524 ATP binding
• GO:0009041 UMP/dUMP kinase activity
• GO:0016301 kinase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006227 dUDP biosynthetic process
• GO:0006233 dTDP biosynthetic process
• GO:0006235 dTTP biosynthetic process
• GO:0016310 phosphorylation
• GO:0046940 nucleoside monophosphate phosphorylation

Cellular Component

• GO:0005634 nucleus
• GO:0005737 cytoplasm

External links

• PDB: RCSB:5uiv, PDBe:5uiv, PDBj:5uiv
• PDBsum: 5uiv
• PubMed: 28742342
• UniProt: Q59TV7