Structure of PDB 5uil Chain A Binding Site BS03

Receptor Information
>5uil Chain A (length=398) Species: 28901 (Salmonella enterica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMKIIIAGKNDIAVNVTRWLQKKKKNIEIYAICNANDTGIDTFQRSFKKY
CKDNLIPIISLAEAYKIDDAIFLSLEFDKIVQPSKFNHNELFNIHFSYLP
KYKGMYTSAWPILNGEDTSGVTLHKIDHGIDTGAIIAQKEIIIQPFETAK
DLYEKYISEGTSLVIDNISTLLNSEYVEKEQNIKYSSYYSKKTIDYSNLE
LNFSKTAFEIINQLRAFTFREYQLPKLDGVNIFLGDVLSSRSIMKPGSIL
ERNDKEIIVSTIDYDVVLYKDNFKEILEACKYSDSKYIAKLIRAKSILFE
KNIYGWSPVIVAAYHGNIELIKWLVSKGANINDRNYKGTTVAMYFKDYML
KSGDYSGLKMLIDLGLDLTLTDYKDYTVFDYLEKSGNKNLLQYMMAFM
Ligand information
Ligand IDT3F
InChIInChI=1S/C16H27N3O14P2/c1-6-4-19(16(24)18-14(6)23)10-3-8(20)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)11(17)12(21)7(2)30-15/h4,7-13,15,20-22H,3,5,17H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t7-,8+,9-,10-,11+,12+,13-,15-/m1/s1
InChIKeyKVYJLJOGNUNRJK-FQLHZTMTSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(OC1OC(C(O)C(N)C1O)C)(O)OP(=O)(O)OCC3OC(N2C=C(C(=O)NC2=O)C)CC3O
CACTVS 3.341C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](N)[CH]1O
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)N)O
CACTVS 3.341C[C@H]1O[C@H](O[P@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](N)[C@H]1O
OpenEye OEToolkits 1.5.0C[C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)N)O
FormulaC16 H27 N3 O14 P2
Name(3R,4S,5R,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate;
thymidine-5'-diphosphate-alpha-D-3,6-dideoxy-3-aminogalactose
ChEMBL
DrugBank
ZINCZINC000058638663
PDB chain5uil Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5uil Molecular architecture of an N-formyltransferase from Salmonella enterica O60.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
E75 F76 G103 M104 Y105 S107 Y195 F218 Y221 Q222
Binding residue
(residue number reindexed from 1)
E76 F77 G104 M105 Y106 S108 Y196 F219 Y222 Q223
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) N92 H94 T121 D130
Catalytic site (residue number reindexed from 1) N93 H95 T122 D131
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004479 methionyl-tRNA formyltransferase activity
GO:0016740 transferase activity
Biological Process
GO:0006413 translational initiation
GO:0009058 biosynthetic process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
Cellular Component
GO:0005829 cytosol

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Cellular Component
External links
PDB RCSB:5uil, PDBe:5uil, PDBj:5uil
PDBsum5uil
PubMed28263875
UniProtU3GK13

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