Structure of PDB 5ns4 Chain A Binding Site BS03

Receptor Information
>5ns4 Chain A (length=138) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLILEKAAQELA
LITGQKPAVTRAGMPIGLRVTLRRDRMWIFLEKLLNVALPGLNPNSFDGR
GNYNLGLREQGMDIAVVTTAETDEEARALLELLGFPFR
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5ns4 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5ns4 Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		R128 N130 T161 A163
Binding residue
(residue number reindexed from 1)		R100 N102 T118 A120
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5ns4, PDBe:5ns4, PDBj:5ns4
PDBsum5ns4
PubMed29211987
UniProtP41201|RL5_THETH Large ribosomal subunit protein uL5 (Gene Name=rplE)

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