Structure of PDB 5mwk Chain A Binding Site BS03

Receptor Information
>5mwk Chain A (length=1040) Species: 818 (Bacteroides thetaiotaomicron) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LLREQFQNPSDEAKPWTFWYWMFGAVSKEGITADLEAMKRAGLGGTYLMP
IKGIKEGPQYNGKAQQLTPEWWEMVRFSMEEADRLGLKLGMHICDGFALA
GGPWMTPKESMQKIVWSDTIVDGGKIKGLHLPQPEAYEGFYEDISLFALP
VKEEAADVMPAQITCANIATGNHIDIKKTVNMDDAGVIRSSYPCYIQYEY
EQPFTCRNIEIILSGNNYQAHRLKVMASDDGVNYRLVKQLVPARQGWQNT
DENSTHAIPATTARYFRFYWTPEGSEPGSEDMDAAKWKPNLKIKELRLHR
EARLDQWEGKAGLVWRVASSTKKEEIGEQDCYALSQIINLTDPFERTLTA
TLPKGKWKLLRMGHTATGHTNATAGGGKGLECDKFNPKAVRKQFDNWFAQ
AFVKTNPDVARRVLKYMHVDSWQCGSQNWSDTFAAEFRKRRGYDLMPYLP
LLAGIPMESAERSEKILRDVRTTIGELVVDVFYQVLADCAKEYDCQFSAE
CVAPTMVSDGLLHYQKVDLPMGEFWLNSPTHDKPNDMLDAISGAHIYGKN
IIQAEGFTEVRGTWNEHPGILKALLDRNYALGINRLFFHVYVHNPWLDRK
PGMTLDGIGLFFQRDQTWWNKGAKAFCEYITRCQSLLQYGHPVADIAVFT
GEEMPRRSILPERLVPSLPGIFGAERVESERIRLANEGQPLRVRPVGVTH
SANMSDPEKWVNPLRGYAYDSFNKDALLRLAKAENGRMTLPGGASYKVLV
LPLPRPMNPDPAALSPEVKQKINELKEAGILIPSLPYKEDDFSSYGLERD
LIVPENIAWTHRQGEQGDIYFIANQLEETRTFTASMRIDGRKPECWNPVT
GEINADIPYEQKSHRTEITLTLAPNESVFIVYPATGLEATEYTVTFTANG
KTIQRQELFDWSKEEDEQIRYYSGTAVYKTTFRWKSKVKEDQQVYLNLGK
VCDLATVRVNGIDCGTIWTAPYRADITAALKKGVNELEIEVTNTWANALK
GADEGKAPFDGIWTNAKYRRAENTLLPAGLLGPLNFDVAN
Ligand information
Ligand IDRAM
InChIInChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6+/m0/s1
InChIKeySHZGCJCMOBCMKK-HGVZOGFYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341C[C@@H]1O[C@@H](O)[C@H](O)[C@H](O)[C@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O)O)O)O
OpenEye OEToolkits 1.5.0CC1C(C(C(C(O1)O)O)O)O
CACTVS 3.341C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5
Namealpha-L-rhamnopyranose;
alpha-L-rhamnose;
6-deoxy-alpha-L-mannopyranose;
L-rhamnose;
rhamnose
ChEMBL
DrugBank
ZINCZINC000003861280
PDB chain5mwk Chain B Residue 5 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5mwk Complex pectin metabolism by gut bacteria reveals novel catalytic functions.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		Y49 Q461 E593 H627
Binding residue
(residue number reindexed from 1)		Y20 Q423 E555 H589
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links