Structure of PDB 5lkg Chain A Binding Site BS03

Receptor Information

>5lkg Chain A (length=308) Species: 1634342 (Norovirus Hu/GII/JP/2015/GII.P17_GII.17/Kawasaki308) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GSKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGEL
QGTTQLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPL
GTPDFKGVVFGMVSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLR
ISDNDDFQFQPTKFTPVGVNDDDDGHPFRQWELPNYSGELTLNMNLAPPV
APNFPGEQLLFFRSFVPCSGGYNQGIIDCLIPQEWIQHFYQESAPSQSDV
ALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPANGHFRFDSWVN
QFYSLAPM

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5lkg Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5lkg Human norovirus inhibition by a human milk oligosaccharide.
Resolution	1.51 Å
Binding residue (original residue number in PDB)	R516 F517
Binding residue (residue number reindexed from 1)	R294 F295
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5lkg, PDBe:5lkg, PDBj:5lkg
PDBsum	5lkg
PubMed	28505592
UniProt	A0A0E4B1P1

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