Structure of PDB 5ldt Chain A Binding Site BS03

Receptor Information

>5ldt Chain A (length=403) Species: 197 (Campylobacter jejuni) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TPLEEAIKDVDVSGVLRYRYDTGNFDKNFLNNSNLNNSKQDHKYRAQVNF
SAAIADNFKAFVQFDYNAVDGGTGVDNATNAEKGLFVRQLYLTYTNEDVA
TSVIAGKQQLNIIWTDNGVDGLVGTGVKVVNNSIDGLTLAAFAVDSFMAA
EQGSDLLGQSTYVGNGKNNNDSFKLDSIGNLYGAAAVGSYDLAGGQFNPQ
LWLAYWDQVAFFYAVDAAYSTTIGINWTLEGAYLGNSLDSELDDKKTYAN
GNLFALKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEI
FYTTGSRLNGDTGRNIFGYVTGGYTFNETVRVGADFVYGGTKTEATTHLG
GGKKLEAVARVDYKYSPKLNFSAFYSYVNLDQGVNTNESADHSTVRLQAL
YKF

Ligand information

Ligand ID

C8E

InChI

InChI=1S/C16H34O5/c1-2-3-4-5-6-7-9-18-11-13-20-15-16-21-14-12-19-10-8-17/h17H,2-16H2,1H3

InChIKey

FEOZZFHAVXYAMB-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04	O(CCCCCCCC)CCOCCOCCOCCO
CACTVS 3.341 OpenEye OEToolkits 1.5.0	CCCCCCCCOCCOCCOCCOCCO

Formula

C16 H34 O5

Name

(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE

PDB chain

5ldt Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5ldt MOMP from Campylobacter jejuni Is a Trimer of 18-Stranded beta-Barrel Monomers with a Ca(2+) Ion Bound at the Constriction Zone.
Resolution	2.88 Å
Binding residue (original residue number in PDB)	A105 G106 G126 V127 D145 N180
Binding residue (residue number reindexed from 1)	A105 G106 G126 V127 D145 N180
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:5ldt, PDBe:5ldt, PDBj:5ldt
PDBsum	5ldt
PubMed	27693650
UniProt	Q659I5

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