Structure of PDB 5kdu Chain A Binding Site BS03

Receptor Information
>5kdu Chain A (length=512) Species: 195103 (Clostridium perfringens ATCC 13124) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSHMASVLELEMRGDSISEAKKRKVWNFQDWQITGLSARAGDKITVYVDV
AEGDPTPTLLYKQSLTQHGGATSFQLKPGKNEITIPEINYESNGIPKDVI
QGGDLFFTNYKSDSQKRAPKVRIEGASKYPVFILGKSDENEVMKELEAYV
EKIKAEPKTTPNIFAVSSNKSLEFVQATYALDWYKKNNKTPKYTAEQWDQ
YIADAMGFWGFDNSKDVNSDFNFRIMPMVKNLSGGAFMNAGNGVIGIRPG
NQDAILAANKGWGVAHELGHNFDTGGRTIVEVTNNMMPLFFESKYKTKTR
ITDQNIWENNTYPKVGLDDYSNNELYNKADSTHLAQLAPLWQLYLYDNTF
YGKFERQFRERDFGNKNREDIYKSWVVAASDAMELDLTEFFARHGIRVDD
KVKEDLAKYPKPDKKIYYLNDLAMNYKGDGFTENAKVSVSTSGSNGNIKL
SFSVDDENKDNILGYEIRRDGKYVGFTSNDSFVDTKSNLDEDGVYVVTPY
DRKLNTLNPIEV
Ligand information
Ligand IDSER
InChIInChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1
InChIKeyMTCFGRXMJLQNBG-REOHCLBHSA-N
SMILES
SoftwareSMILES
CACTVS 3.341N[CH](CO)C(O)=O
OpenEye OEToolkits 1.5.0C(C(C(=O)O)N)O
CACTVS 3.341N[C@@H](CO)C(O)=O
ACDLabs 10.04O=C(O)C(N)CO
OpenEye OEToolkits 1.5.0C([C@@H](C(=O)O)N)O
FormulaC3 H7 N O3
NameSERINE
ChEMBLCHEMBL11298
DrugBankDB00133
ZINCZINC000000895034
PDB chain5kdu Chain A Residue 1114 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5kdu Recognition of protein-linked glycans as a determinant of peptidase activity.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		F727 M728 E757
Binding residue
(residue number reindexed from 1)		F237 M238 E267
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links