Structure of PDB 5hc8 Chain A Binding Site BS03

Receptor Information
>5hc8 Chain A (length=236) Species: 39330 (Lavandula lanata) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DEVTPNHVAIIIDGHRKWAKSRGVTVQEGHQTGVNNWKHIISRASQLGIK
LLTIWALSPQNFNRSKMEVDFLMRIYEDFLRSDVKELVTSQQDIQFSAIG
DKSRLPEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAK
VEHGILRPDDIDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQL
PFTEFYFTPKLFPDFGEADLLDALASYRCRYRGFGE
Ligand information
Ligand IDISY
InChIInChI=1S/C5H12O6P2S/c1-5(2)3-4-14-13(9,10)11-12(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)
InChIKeyYLTQZUVQWVAPNP-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0CC(=C)CCSP(=O)(O)OP(=O)(O)O
OpenEye OEToolkits 1.7.0CC(=C)CCS[P@@](=O)(O)OP(=O)(O)O
ACDLabs 12.01O=P(O)(OP(=O)(O)SCCC(=C)\C)O
CACTVS 3.370CC(=C)CCS[P](O)(=O)O[P](O)(O)=O
FormulaC5 H12 O6 P2 S
Name3-methylbut-3-enylsulfanyl(phosphonooxy)phosphinic acid;
Isopentyl S-Thiolodiphosphate
ChEMBLCHEMBL448120
DrugBank
ZINC
PDB chain5hc8 Chain A Residue 405 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5hc8 Structure and Function of a "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase
Resolution1.87 Å
Binding residue
(original residue number in PDB)
I75 D76 W118 S121 N124 R127 R248 R254 S256
Binding residue
(residue number reindexed from 1)
I12 D13 W55 S58 N61 R64 R185 R191 S193
Annotation score2
Enzymatic activity
Catalytic site (original residue number in PDB) D76 H93 M189
Catalytic site (residue number reindexed from 1) D13 H30 M126
Enzyme Commision number 2.5.1.-
Gene Ontology
Molecular Function
GO:0002094 polyprenyltransferase activity
GO:0016740 transferase activity
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0045547 dehydrodolichyl diphosphate synthase activity
GO:0046872 metal ion binding
Biological Process
GO:0009409 response to cold
GO:0009668 plastid membrane organization
GO:0016094 polyprenol biosynthetic process
Cellular Component
GO:0009570 chloroplast stroma

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5hc8, PDBe:5hc8, PDBj:5hc8
PDBsum5hc8
PubMed26922900
UniProtA0A140UHQ1

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