Structure of PDB 5g3y Chain A Binding Site BS03

Receptor Information
>5g3y Chain A (length=213) Species: 32630 (synthetic construct) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNLILLGPPGAGKGTQAEKIVEEYGIPHISTGDMFRAAIKEGTELGLKAK
EYMDKGELVPDEVTIGLVKERLSQPDCKKGFLLDGFPRTVAQAEALDKIL
KELGIKLDAVINIEVPREELLERLTGRRVCRQCGATYHVIFNPPKVEGVC
DKCGGELYQRSDDNEETVSNRLDVYEDQTAPLIDYYEKKGLLKNIDGDQD
IDAVFADIKAALG
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain5g3y Chain A Residue 1216 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5g3y Evolutionary drivers of thermoadaptation in enzyme catalysis.
Resolution1.18 Å
Binding residue
(original residue number in PDB)		P9 T31 G32 R36 M53 E57 L58 V59 T64 G85 R88 Q92 R127 R160
Binding residue
(residue number reindexed from 1)		P9 T31 G32 R36 M53 E57 L58 V59 T64 G85 R88 Q92 R127 R160
Annotation score5
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Nov 24 03:46:15 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5g3y', asym_id = 'A', bs = 'BS03', title = 'Evolutionary drivers of thermoadaptation in enzyme catalysis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5g3y', asym_id='A', bs='BS03', title='Evolutionary drivers of thermoadaptation in enzyme catalysis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004017,0005524,0006139,0016776,0019205', uniprot = '', pdbid = '5g3y', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004017,0005524,0006139,0016776,0019205', uniprot='', pdbid='5g3y', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>