Structure of PDB 5fwj Chain A Binding Site BS03

Receptor Information
>5fwj Chain A (length=435) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPP
FAVEVDNFRFTPRIQRLNELTREYTLQSFGEMADSFKADYFNMPVHMVPT
ELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEE
YATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDH
WSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTLMNPNTLMSHGVPVV
RTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYR
RLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKAL
LEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHI
NDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAES
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain5fwj Chain A Residue 1772 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fwj Structural Analysis of Human Kdm5B Guides Histone Demethylase Inhibitor Development.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		H514 E516 H602
Binding residue
(residue number reindexed from 1)		H196 E198 H268
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G496 Y503 H514 E516 H602 A614
Catalytic site (residue number reindexed from 1) G178 Y185 H196 E198 H268 A280
Enzyme Commision number 1.14.11.67: [histone H3]-trimethyl-L-lysine(4) demethylase.
External links
PDB RCSB:5fwj, PDBe:5fwj, PDBj:5fwj
PDBsum5fwj
PubMed27214403
UniProtP41229|KDM5C_HUMAN Lysine-specific demethylase 5C (Gene Name=KDM5C)

[Back to BioLiP]