Structure of PDB 5f24 Chain A Binding Site BS03

Receptor Information
>5f24 Chain A (length=260) Species: 1280 (Staphylococcus aureus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TDKTLQQIDKLICSWLKQIDNVIPQLIMEMTETKRHRFDLVTNVDKQIQQ
QFQQFLATYFPEHQLLAEEKMITNEINHLWIMDPIDGTANLVKQQEDYCI
ILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGFKMEEPPSLKLEDA
IISFNAQVMNLDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNP
KPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVLKIL
NANGGYQKYR
Ligand information
Ligand IDIPD
InChIInChI=1S/C6H13O9P/c7-1-2(8)4(10)6(5(11)3(1)9)15-16(12,13)14/h1-11H,(H2,12,13,14)/p-2/t1-,2-,3+,4-,5-,6-/m1/s1
InChIKeyINAPMGSXUVUWAF-UOTPTPDRSA-L
SMILES
SoftwareSMILES
ACDLabs 12.01O=P([O-])([O-])OC1C(O)C(O)C(O)C(O)C1O
CACTVS 3.370O[C@@H]1[C@@H](O)[C@@H](O)[C@@H](O[P]([O-])([O-])=O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.7.6[C@H]1([C@H](C([C@@H]([C@@H](C1O)O)O)OP(=O)([O-])[O-])O)O
OpenEye OEToolkits 1.7.6C1(C(C(C(C(C1O)O)OP(=O)([O-])[O-])O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O)[CH](O[P]([O-])([O-])=O)[CH](O)[CH]1O
FormulaC6 H11 O9 P
NameD-MYO-INOSITOL-1-PHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain5f24 Chain A Residue 306 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5f24 Structural elucidation of the NADP(H) phosphatase activity of staphylococcal dual-specific IMPase/NADP(H) phosphatase
Resolution2.5 Å
Binding residue
(original residue number in PDB)
D91 G92 G183 C185 N202
Binding residue
(residue number reindexed from 1)
D86 G87 G178 C180 N197
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) E70 D88 I90 D91 T93 D209
Catalytic site (residue number reindexed from 1) E68 D83 I85 D86 T88 D204
Enzyme Commision number 3.1.3.25: inositol-phosphate phosphatase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008934 inositol monophosphate 1-phosphatase activity
GO:0046872 metal ion binding
Biological Process
GO:0006020 inositol metabolic process
GO:0007165 signal transduction

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5f24, PDBe:5f24, PDBj:5f24
PDBsum5f24
PubMed26894675
UniProtQ2FVV7

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