Structure of PDB 5d6k Chain A Binding Site BS03

Receptor Information
>5d6k Chain A (length=448) Species: 264199 (Streptococcus thermophilus LMG 18311) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT
AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP
FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGI
NLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY
LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTI
VAIAIPVFYFAWMISHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER
VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTANQPSSPTKFAVGLMFAGL
SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPNSQMMSMWFLS
SSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL
Ligand information
Ligand ID97M
InChIInChI=1S/C19H36O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(22)23-17-18(21)16-20/h7-8,18,20-21H,2-6,9-17H2,1H3/b8-7-/t18-/m1/s1
InChIKeyKVYUBFKSKZWZSV-JTHGQSKGSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCC\C=C/CCCCCCCC(=O)OC[C@H](O)CO
ACDLabs 12.01CCCCCC[C@H]=[C@H]CCCCCCCC(=O)OCC(CO)O
OpenEye OEToolkits 1.9.2CCCCCCC=CCCCCCCCC(=O)OCC(CO)O
CACTVS 3.385CCCCCCC=CCCCCCCCC(=O)OC[CH](O)CO
OpenEye OEToolkits 1.9.2CCCCCC/C=C\CCCCCCCC(=O)OC[C@@H](CO)O
FormulaC19 H36 O4
Name(2R)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate
ChEMBL
DrugBank
ZINCZINC000032840895
PDB chain5d6k Chain A Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5d6k The cubicon method for concentrating membrane proteins in the cubic mesophase.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		L369 L370 V451
Binding residue
(residue number reindexed from 1)		L353 L354 V421
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0022857 transmembrane transporter activity
GO:0042802 identical protein binding
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0006857 oligopeptide transport
GO:0015833 peptide transport
GO:0055085 transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5d6k, PDBe:5d6k, PDBj:5d6k
PDBsum5d6k
PubMed28771236
UniProtQ5M4H8

[Back to BioLiP]