Structure of PDB 5csy Chain A Binding Site BS03

Receptor Information
>5csy Chain A (length=506) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVGEDFPSEYEQWLPVPDPESRRRAGVLLHPTSFRGPHGIGDLGEEAFRF
IDWLHSTGCSVWQVLPLVPPDEGGSPYAGQDANCGNTLLISLDELVKDGL
LIKDELPQPIDADSVNYQTANKLKSPLITKAAKRLIDGNGELKSKLLDFR
NDPSISCWLEDAAYFAAIDNTLNAYSWFEWPEPLKNRHLSALEAIYESQK
EFIDLFIAKQFLFQRQWQKVREYARRQGVDIMGDMPIYVGYHSADVWANK
KHFLLNKKGFPLLVSGVPPDLFSETGQLWGSPLYDWKAMESDQYSWWVNR
IRRAQDLYDECRIDHFRGFAGFWAVWKVGPGKSLFDAISKGVGKIKIIAE
DLGVITKDVVELRKSIGAPGMAVLQFAFGGGADNPHLPHNHEVNQVVYSG
THDNDTIRGWWDTLDQEEKSKAMKYLSIAGEDDISWSVIQAAFSSTAQTA
IIPMQDILGLGSSARMNTPATEVGNWGWRIPSSTSFDNLETESDRLRDLL
SLYGRL
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5csy Chain C Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5csy Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1).
Resolution2.05 Å
Binding residue
(original residue number in PDB)		D373 H374 E420 D473
Binding residue
(residue number reindexed from 1)		D314 H315 E350 D403
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) D373 E420 D473
Catalytic site (residue number reindexed from 1) D314 E350 D403
Enzyme Commision number 2.4.1.25: 4-alpha-glucanotransferase.
Gene Ontology
Molecular Function
GO:0004134 4-alpha-glucanotransferase activity
GO:0016757 glycosyltransferase activity
Biological Process
GO:0000025 maltose catabolic process
GO:0005975 carbohydrate metabolic process
GO:0005983 starch catabolic process
GO:0006006 glucose metabolic process
Cellular Component
GO:0009501 amyloplast
GO:0009507 chloroplast

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5csy, PDBe:5csy, PDBj:5csy
PDBsum5csy
PubMed26504082
UniProtQ9LV91|DPE1_ARATH 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic (Gene Name=DPE1)

[Back to BioLiP]