Structure of PDB 5chi Chain A Binding Site BS03

Receptor Information
>5chi Chain A (length=230) Species: 186497 (Pyrococcus furiosus DSM 3638) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVMVKYANPYD
YDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDAL
GISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAG
IYSAKWGIENVEKEGHLIIGLPRYMEVNIKDGKIIGRSLDPREGGLYGSA
EVSVPEGVKWEIYPNPVARRFMIFEIFSKR
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5chi Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5chi Structural basis of two-nucleotide removal of ssDNA by a cryptic RNase H fold 3'-5' exonuclease PF2046 from Pyrococcus furiosus
Resolution2.472 Å
Binding residue
(original residue number in PDB)		D7 D80
Binding residue
(residue number reindexed from 1)		D8 D81
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5chi, PDBe:5chi, PDBj:5chi
PDBsum5chi
PubMed
UniProtQ8TZE9

[Back to BioLiP]