Structure of PDB 4v1u Chain A Binding Site BS03
Receptor Information
>4v1u Chain A (length=746) Species:
118322
(Lyngbya aestuarii) [
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LLQIQPHFHVEVIEPKQVYLLGEQANHALTGQLYCQILPLLNGQYTLEQI
VEKLDGEVPPEYIDYVLERLAEKGYLTEAAPELSSEVAAFWSELGIAPPV
AAEALRQPVTLTPVGNISEVTVAALTTALRDIGISVQTALNVVLTDDYLQ
PELAKINKQALESQQTWLLVKPVGSVLWLGPVFVPGKTGCWDCLAHRLRG
NREVEASVLRQKQAQGCLPTARATLPSTLQTGLQFAATEIAKWIVKYHVN
ATAPGTVFFPTLDGKIITLNHSILDLKSHILIKRSQCPTCGDPKILQHRG
FEPLKLESRPKQGHRGTTPEQTVQKYQHLISPVTGVVTELVRITDPANPL
VHTYRAGHSFGSATSLRGLRNTLKHKSSGKGKTDSQSKASGLCEAVERYS
GIFQGDEPRKRATLAELGDLAIHPEQCLCFSDGQYANRETLNEQATVAHD
WIPQRFDASQAIEWTPVWSLTEQTHKYLPTALCYYHYPLPPEHRFARGDS
NGNAAGNTLEEAILQGFMELVERDGVALWWYNRLRRPAVDLGSFNEPYFV
QLQQFYRENDRDLWVLDLTADLGIPAFAGVSNRKTGSSERLILGFGAHLD
PTIAILRAVTEVNQIGLELDKVPDENLKSDATDWLITEKLADHPYLLPDT
TQPLKTAQDYPKRWSDDIYTDVMTCVNIAQQAGLETLVIDQTRPDIGLNV
VKVTVPGMRHFWSRFGEGRLYDVPVKLGWLDEPLTEAQMNPTPMPF
Ligand information
Ligand ID
AMP
InChI
InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
UDMBCSSLTHHNCD-KQYNXXCUSA-N
SMILES
Software
SMILES
CACTVS 3.370
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
ACDLabs 12.01
O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
Formula
C10 H14 N5 O7 P
Name
ADENOSINE MONOPHOSPHATE
ChEMBL
CHEMBL752
DrugBank
DB00131
ZINC
ZINC000003860156
PDB chain
4v1u Chain A Residue 777 [
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Receptor-Ligand Complex Structure
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PDB
4v1u
Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing.
Resolution
2.86 Å
Binding residue
(original residue number in PDB)
R344 K409 Q415 S419 C422 E423 E426 A533 A534 N536 R636
Binding residue
(residue number reindexed from 1)
R315 K380 Q386 S390 C393 E394 E397 A504 A505 N507 R607
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0046872
metal ion binding
View graph for
Molecular Function
External links
PDB
RCSB:4v1u
,
PDBe:4v1u
,
PDBj:4v1u
PDBsum
4v1u
PubMed
26098679
UniProt
A0YXD2
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