Structure of PDB 4p7x Chain A Binding Site BS03

Receptor Information
>4p7x Chain A (length=286) Species: 266835 (Mesorhizobium japonicum MAFF 303099) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PQFEKGATTRILGVVQLDQRRLTDDLAVLAKSNFSSEYSDFACGRWEFCM
LRNQSGKQEEQRVVVHETPALATPLGQSLPYLNELLDNHFDRDSIRYARI
IRISENACIIPHRDYLELEGKFIRVHLVLDTNEKCSNTEENNIFHMGRGE
IWFLDASLPHSAGCFSPTPRLHLVVDIEGTRSLEEVAINVEQPSARNATV
DTRKEWTDETLESVLGFSEIISEANYREIVAILAKLHFFHKVHCVDMYGW
LKEICRRRGEPALIEKANSLERFYLIDRAAGEVMTY
Ligand information
Ligand IDYCP
InChIInChI=1S/C6H11NO2/c8-6(9)5-3-1-2-4-7-5/h5,7H,1-4H2,(H,8,9)/t5-/m0/s1
InChIKeyHXEACLLIILLPRG-YFKPBYRVSA-N
SMILES
SoftwareSMILES
CACTVS 3.352OC(=O)[C@@H]1CCCCN1
OpenEye OEToolkits 1.7.0C1CCNC(C1)C(=O)O
OpenEye OEToolkits 1.7.0C1CCN[C@@H](C1)C(=O)O
CACTVS 3.352OC(=O)[CH]1CCCCN1
FormulaC6 H11 N O2
Name(2S)-piperidine-2-carboxylic acid
ChEMBLCHEMBL322883
DrugBank
ZINCZINC000000157015
PDB chain4p7x Chain A Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4p7x Refined Regio- and Stereoselective Hydroxylation of l-Pipecolic Acid by Protein Engineering of l-Proline cis-4-Hydroxylase Based on the X-ray Crystal Structure.
Resolution1.3 Å
Binding residue
(original residue number in PDB)		F35 V57 R93 I103 D108 R118
Binding residue
(residue number reindexed from 1)		F41 V63 R99 I109 D114 R124
Annotation score4
Enzymatic activity
Enzyme Commision number 1.14.11.56: L-proline cis-4-hydroxylase.
Gene Ontology
Molecular Function
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0018193 peptidyl-amino acid modification

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Molecular Function
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Biological Process
External links
PDB RCSB:4p7x, PDBe:4p7x, PDBj:4p7x
PDBsum4p7x
PubMed25171735
UniProtQ989T9|P4H_RHILO L-proline cis-4-hydroxylase (Gene Name=mlr6283)

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