Structure of PDB 4oi1 Chain A Binding Site BS03

Receptor Information
>4oi1 Chain A (length=395) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ENVQEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPA
KSRVAAFTWKGATIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREE
QAKAKGPRLLLVGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSVS
VPGTVAAVLVQKTADVIDGFERNQPIVFNFGHTSPSANLSLYEALFKEMA
TTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCIVKAASAFEVDVVIVLD
HERLYSDLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVHRYFYGT
RANNLYPFTFDVSFDDVTLCKIGKLVIMEPSADIKHHLFAFSRSTKADEN
VLKSPVFGFCLVTEVDLEKRTMSILCPQRTIPSKVLVFSDITHLD
Ligand information
Ligand IDALF
InChIInChI=1S/Al.4FH/h;4*1H/q+3;;;;/p-4
InChIKeyUYOMQIYKOOHAMK-UHFFFAOYSA-J
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		F[Al-](F)(F)F
FormulaAl F4
NameTETRAFLUOROALUMINATE ION
ChEMBL
DrugBankDB04444
ZINC
PDB chain4oi1 Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4oi1 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		T123 K127 D151 Q154 G232 R288 R293
Binding residue
(residue number reindexed from 1)		T115 K119 D143 Q146 G224 R280 R285
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity
GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity
Biological Process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005849 mRNA cleavage factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4oi1, PDBe:4oi1, PDBj:4oi1
PDBsum4oi1
PubMed24813946
UniProtP52874|CLP1_CAEEL Protein clpf-1 (Gene Name=clpf-1)

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