Structure of PDB 4nnc Chain A Binding Site BS03

Receptor Information
>4nnc Chain A (length=483) Species: 626418 (Burkholderia glumae BGR1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSLYITAAPIGAVPKFLDPFEATFIPSFLLEGFFDADRCASIAADLKTDG
WEVVPAGGRLLQVGHAQPIAAHFPKPWLAALSNKLARRIVLQLTTYGWIV
SEQGDLLWEHERQHHYLPPALIEAIEKESPALLKNMEEAGWIACAAGYWQ
AGKARSPYLPITPEAITEETIRSMRAGAAVVHLHTRDLSDRRRIEIPGLG
VVTVGSQRNQIVLDDYDAIVPMVKKREPAAILNLSTSVRGDRHGARSKLR
RAHLKFYDDVGSAPEVASLSPAAVVFQGGGGYDNAPDFLDAQFDHFERVG
TRPEVEVFNHAIVDNATSLYRDRLLRTGKPVLFMLVAGVDQYRRDPITGE
VEDDSLIARVVREEISSLLADESADSHRRAVELAIGQLRPVVERLRASFP
VSKISILLPGPMQNLLVDVALGLGLDGIRVGLEDGLTVNDARVPGGVRKA
RGTWEQVSLVREELLGRGATILTAAQVRDMFGL
Ligand information
Ligand ID2KQ
InChIInChI=1S/C25H42N7O19P3S/c1-24(2,19(37)22(38)28-5-4-14(33)27-6-7-55-25(3,39)8-15(34)35)10-48-54(45,46)51-53(43,44)47-9-13-18(50-52(40,41)42)17(36)23(49-13)32-12-31-16-20(26)29-11-30-21(16)32/h11-13,17-19,23,36-37,39H,4-10H2,1-3H3,(H,27,33)(H,28,38)(H,34,35)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/t13-,17-,18-,19+,23-,25+/m1/s1
InChIKeyFIZPFHAKAOWUQH-RCVSXOLZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(C)(CC(=O)O)O)O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCS[C](C)(O)CC(O)=O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCS[C@](C)(O)CC(O)=O
ACDLabs 12.01O=C(O)CC(O)(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)C
OpenEye OEToolkits 1.7.6C[C@](CC(=O)O)(O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O
FormulaC25 H42 N7 O19 P3 S
Name(3S)-3-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-oxidanyl-butanoic acid
ChEMBL
DrugBank
ZINCZINC000208032889
PDB chain4nnc Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4nnc Structural Basis for Bacterial Quorum Sensing-mediated Oxalogenesis.
Resolution2.279 Å
Binding residue
(original residue number in PDB)
R127 L131 K193 H222 H224 S275 S308 E346 F348 P449 P451 R469 E473 D474 L476
Binding residue
(residue number reindexed from 1)
R87 L91 K153 H182 H184 S235 S268 E306 F308 P409 P411 R429 E433 D434 L436
Annotation score3
Enzymatic activity
Enzyme Commision number 4.1.3.-
Gene Ontology
Molecular Function
GO:0043720 3-keto-5-aminohexanoate cleavage activity

View graph for
Molecular Function
External links
PDB RCSB:4nnc, PDBe:4nnc, PDBj:4nnc
PDBsum4nnc
PubMed24616091
UniProtC5AJX5

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