Structure of PDB 4g24 Chain A Binding Site BS03

Receptor Information

>4g24 Chain A (length=476) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSL
AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEM
AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP
EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE
VATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC
KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPF
DAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG
GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDE
MRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESED
GTWHVPMSVEDDLQTSRQWLCAKRSK

Ligand information

Ligand ID

ACA

InChI

InChI=1S/C6H13NO2/c7-5-3-1-2-4-6(8)9/h1-5,7H2,(H,8,9)

InChIKey

SLXKOJJOQWFEFD-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04	O=C(O)CCCCCN
OpenEye OEToolkits 1.5.0	C(CCC(=O)O)CCN
CACTVS 3.341	NCCCCCC(O)=O

Formula

C6 H13 N O2

Name

6-AMINOHEXANOIC ACID;
AMINOCAPROIC ACID

PDB chain

4g24 Chain A Residue 1004 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	4g24 Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.
Resolution	1.95 Å
Binding residue (original residue number in PDB)	N402 V406
Binding residue (residue number reindexed from 1)	N308 V312
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.1.26.5: ribonuclease P.

External links

PDB	RCSB:4g24, PDBe:4g24, PDBj:4g24
PDBsum	4g24
PubMed	22991464
UniProt	Q66GI4\|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial (Gene Name=PRORP1)

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