Structure of PDB 4dn8 Chain A Binding Site BS03

Receptor Information
>4dn8 Chain A (length=155) Species: 9823 (Sus scrofa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ITALRQQVETLQGQVQRLQKAFSQYKKVELFPNGRGVGEKIFKTGGFEKT
FQDAQQVCTQAGGQMASPRSETENEALSQLVTAQNKAAFLSMTDIKTEGQ
FTYPTGEPLVYANWAPGEPNNNGGSSGAENCVEIFPNGKWNDKACGELRL
VICEF
Ligand information
Ligand IDBMA
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-RWOPYEJCSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-mannopyranose;
beta-D-mannose;
D-mannose;
mannose
ChEMBL
DrugBank
ZINCZINC000003830679
PDB chain4dn8 Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4dn8 A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		E321 N325 E329 N341 K343
Binding residue
(residue number reindexed from 1)		E118 N122 E129 N141 K143
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4dn8, PDBe:4dn8, PDBj:4dn8
PDBsum4dn8
PubMed22685299
UniProtQ9N1X4|SFTPD_PIG Pulmonary surfactant-associated protein D (Gene Name=SFTPD)

[Back to BioLiP]