Structure of PDB 3w5w Chain A Binding Site BS03

Receptor Information
>3w5w Chain A (length=340) Species: 295405 (Bacteroides fragilis YCH46) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQD
KIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFN
ALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFR
LICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKG
IDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKF
DYIKGDSEGFVNIPLSIKNVCFSCFLREDTEMIKISLRSVGKFPCNRLAA
EFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain3w5w Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3w5w Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.
Resolution2.95 Å
Binding residue
(original residue number in PDB)		D35 D99 H125 D177
Binding residue
(residue number reindexed from 1)		D34 D98 H124 D176
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3w5w, PDBe:3w5w, PDBj:3w5w
PDBsum3w5w
PubMed23851074
UniProtQ64PD9

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