Structure of PDB 3st8 Chain A Binding Site BS03

Receptor Information
>3st8 Chain A (length=475) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DTAVLVLAAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVV
LGHDHQRIAPLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYA
GNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILR
TQDHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQ
QELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRV
VAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVG
PDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKL
GAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRR
TTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQR
NIENWVQRKRPGSPAAQASKRASEM
Ligand information
Ligand IDGP1
InChIInChI=1S/C6H14NO8P/c7-3-5(10)4(9)2(1-8)14-6(3)15-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6-/m1/s1
InChIKeyYMJBYRVFGYXULK-QZABAPFNSA-N
SMILES
SoftwareSMILES
CACTVS 3.341N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[P](O)(O)=O
ACDLabs 10.04O=P(OC1OC(C(O)C(O)C1N)CO)(O)O
CACTVS 3.341N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[P](O)(O)=O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)N)O)O)O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)OP(=O)(O)O)N)O)O)O
FormulaC6 H14 N O8 P
Name2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose;
GLUCOSAMINE 1-PHOSPHATE;
1-O-phosphono-alpha-D-glucosamine;
2-amino-2-deoxy-1-O-phosphono-alpha-D-glucose;
2-amino-2-deoxy-1-O-phosphono-D-glucose;
2-amino-2-deoxy-1-O-phosphono-glucose
ChEMBL
DrugBankDB03111
ZINCZINC000004097029
PDB chain3st8 Chain A Residue 499 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3st8 Structure of Mycobacterium tuberculosis GlmU in complex with Acetyl CoA
Resolution1.98 Å
Binding residue
(original residue number in PDB)
P373 H374 N388
Binding residue
(residue number reindexed from 1)
P368 H369 N383
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) R19
Catalytic site (residue number reindexed from 1) R14
Enzyme Commision number 2.3.1.157: glucosamine-1-phosphate N-acetyltransferase.
2.7.7.23: UDP-N-acetylglucosamine diphosphorylase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003977 UDP-N-acetylglucosamine diphosphorylase activity
GO:0005515 protein binding
GO:0016746 acyltransferase activity
GO:0016779 nucleotidyltransferase activity
GO:0019134 glucosamine-1-phosphate N-acetyltransferase activity
GO:0046872 metal ion binding
GO:0070569 uridylyltransferase activity
Biological Process
GO:0000902 cell morphogenesis
GO:0006048 UDP-N-acetylglucosamine biosynthetic process
GO:0008360 regulation of cell shape
GO:0009245 lipid A biosynthetic process
GO:0009252 peptidoglycan biosynthetic process
GO:0035635 entry of bacterium into host cell
GO:0044650 adhesion of symbiont to host cell
GO:0071555 cell wall organization
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3st8, PDBe:3st8, PDBj:3st8
PDBsum3st8
PubMed
UniProtP9WMN3|GLMU_MYCTU Bifunctional protein GlmU (Gene Name=glmU)

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