Structure of PDB 3o0f Chain A Binding Site BS03

Receptor Information

>3o0f Chain A (length=287) Species: 367928 (Bifidobacterium adolescentis ATCC 15703) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AEPPAQGWDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWD
EATEASEEIGLPLLLGTEITAVDEDVSVHMLAFQYDPSNEHISSMFANTR
AARLRRTKRMVERLSQDFPITWDDVLAQVKEGERTTIGRPHIADALVAAG
VYETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAHAGDP
QRNRRLLSDEQLDAMIADGLDGLEVWHRGNPPEQRERLLTIAARHDLLVT
GGSDWHGKGKPNGLGENLTDDDTVREILCRGVDLIGR

Ligand information

Ligand ID

InChI

InChI=1S/Fe/q+3

InChIKey

VTLYFUHAOXGGBS-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 CACTVS 3.341 OpenEye OEToolkits 1.5.0	[Fe+3]

Formula

Name

FE (III) ION

PDB chain

3o0f Chain A Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3o0f Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.
Resolution	1.94 Å
Binding residue (original residue number in PDB)	E74 H85 H202
Binding residue (residue number reindexed from 1)	E68 H79 H196
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0003824	catalytic activity
GO:0004534	5'-3' RNA exonuclease activity
GO:0035312	5'-3' DNA exonuclease activity
GO:0046872	metal ion binding

	Biological Process
GO:0006259	DNA metabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:3o0f, PDBe:3o0f, PDBj:3o0f
PDBsum	3o0f
PubMed	21538547
UniProt	A1A2L3

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