Structure of PDB 3n9m Chain A Binding Site BS03

Receptor Information

>3n9m Chain A (length=503) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KESDRCGGCGKFTHEDDLIKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHF
LCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEKHLG
IEVGSKTWIEDFITRENTVPSPTDDEVCIVEDGYEFRREFEKLGGADNWG
KVFMVKDMDGLNMTMPKPGFDLEDVVKIMGSDYEVDTIDVYNQSTYSMKL
DTFRKLFRDTKNRPLLYNFLSLEFSDNNEMKEIAKPPRFVQEISMVNRLW
PDVSGAEYIKLLQREEYLPEDQRPKVEQFCLAGMAGSYTDFHVDFGGSSV
YYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVI
KEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYHLENAIRK
EIRSEEKFYFPNFELLHWMYMRNVLLEKITEANQEGSDMREQEKNIWTAS
QIMKAEMERWMDRELRLGPEKNAILPTDDKNKIMISVRKQIEIQTKIQNA
KNK

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

3n9m Chain A Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3n9m Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans
Resolution	2.493 Å
Binding residue (original residue number in PDB)	C244 C247 C274
Binding residue (residue number reindexed from 1)	C41 C44 C71
Annotation score	4

Enzymatic activity

Enzyme Commision number

1.14.11.-

External links

PDB	RCSB:3n9m, PDBe:3n9m, PDBj:3n9m
PDBsum	3n9m
PubMed	20567261
UniProt	Q9GYI0\|KDM7_CAEEL Lysine-specific demethylase 7 homolog (Gene Name=jmjd-1.2)

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