Structure of PDB 3j16 Chain A Binding Site BS03

Receptor Information
>3j16 Chain A (length=386) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSK
LDEAGKKKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTDESGASNVDIP
VGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEG
IAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMK
KDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAH
CSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWY
GEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKAL
VLSTLHSLGEELDQLTGIACILKYPLPDLDEDDGEE
Ligand information
>3j16 Chain L (length=75) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uccgugauaguuuaauggucagaaugggcgcuugucgcgugccagaucgg
gguucaauuccccgucgcggagcca
<<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<
<<.......>>>>>>>>>>>>....
Receptor-Ligand Complex Structure
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PDB3j16 Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Resolution7.2 Å
Binding residue
(original residue number in PDB)		R177 T178 V181 L182 K183 E186 K187
Binding residue
(residue number reindexed from 1)		R177 T178 V181 L182 K183 E186 K187
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004521 RNA endonuclease activity
GO:0005515 protein binding
GO:0043022 ribosome binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0006417 regulation of translation
GO:0010467 gene expression
GO:0016070 RNA metabolic process
GO:0032790 ribosome disassembly
GO:0045727 positive regulation of translation
GO:0045948 positive regulation of translational initiation
GO:0051301 cell division
GO:0051321 meiotic cell cycle
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay
GO:0070651 nonfunctional rRNA decay
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay
GO:0071025 RNA surveillance
GO:0072344 rescue of stalled ribosome
Cellular Component
GO:0005737 cytoplasm
GO:1990533 Dom34-Hbs1 complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3j16, PDBe:3j16, PDBj:3j16
PDBsum3j16
PubMed22358840
UniProtP33309|DOM34_YEAST Protein DOM34 (Gene Name=DOM34)

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