Structure of PDB 3f7k Chain A Binding Site BS03

Receptor Information

>3f7k Chain A (length=151) Species: 6376 (Alvinella pompejana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AIHAVCVLKGDSPVTGTIHLKEEGDMVTVTGEITGLTPGKHGFHVHEFGD
NTNGCTSAGGHFNPHGKEHGAPEDENRHAGDLGNVVAGEDGKAVINMKDK
LVKLTGPDSVIGRTLVVHVDEDDLGRGGHEQSKITGNAGGRLACGVIGIT
K

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

3f7k Chain A Residue 203 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3f7k Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
Resolution	1.35 Å
Binding residue (original residue number in PDB)	H61 H69 H78 D81
Binding residue (residue number reindexed from 1)	H61 H69 H78 D81
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	H44 H46 H61 H69 H78 D81 H118 R141
Catalytic site (residue number reindexed from 1)	H44 H46 H61 H69 H78 D81 H118 R141
Enzyme Commision number	1.15.1.1: superoxide dismutase.

Gene Ontology

	Molecular Function
GO:0004784	superoxide dismutase activity
GO:0005507	copper ion binding
GO:0016491	oxidoreductase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006801	superoxide metabolic process
GO:0019430	removal of superoxide radicals

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Molecular Function

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Biological Process

External links

PDB	RCSB:3f7k, PDBe:3f7k, PDBj:3f7k
PDBsum	3f7k
PubMed	19063897
UniProt	B6CHW7

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