Structure of PDB 2yye Chain A Binding Site BS03

Receptor Information

>2yye Chain A (length=339) Species: 224324 (Aquifex aeolicus VF5)

GGIMVELLKLVRSSGCAAKVGPGDLQEILKGFNIYTDESTLVSIGDDAGV
YEHNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAI
SCFNNCELDIEIFREVIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAG
ICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEGILKEEDINEAIEN
MLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKV
PYYQLSENLVKKKIYPKGAIENLNFVKNYLKSNLDNWKLILLSDPVTSGG
LLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL

Ligand information

• Ligand ID: CO
• InChI: InChI=1S/Co/q+2
• InChIKey: XLJKHNWPARRRJB-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Co+2]
  CACTVS 3.341: [Co++]
• Formula: Co
• Name: COBALT (II) ION
• DrugBank: DB14205
• PDB chain: 2yye Chain A Residue 704

Receptor-Ligand Complex Structure

Structure summary

• PDB: 2yye Structure of selenophosphate synthetase essential for selenium incorporation into proteins and RNAs
• Resolution: 2.1 Å
• Binding residue (original residue number in PDB): D44 T58 D83
• Binding residue (residue number reindexed from 1): D47 T61 D86
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.7.9.3: selenide, water dikinase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0004756 selenide, water dikinase activity
• GO:0005524 ATP binding
• GO:0016301 kinase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0016260 selenocysteine biosynthetic process
• GO:0016310 phosphorylation

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:2yye, PDBe:2yye, PDBj:2yye
• PDBsum: 2yye
• PubMed: 18773910
• UniProt: O67139|SELD_AQUAE Selenide, water dikinase (Gene Name=selD)