Structure of PDB 2onh Chain A Binding Site BS03

Receptor Information
>2onh Chain A (length=543) Species: 29719 (Mentha spicata) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQ
IRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYS
TSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFL
LTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKR
PNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTG
FVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYD
VYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMK
EKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGP
CMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVS
RGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGK
DFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain2onh Chain A Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2onh Structure of limonene synthase, a simple model for terpenoid cyclase catalysis.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		D496 T500
Binding residue
(residue number reindexed from 1)		D440 T444
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) R315 W324 N345 D352 D356 S452 I453 S454 R493 D496 T500 E504 Y573 D577 H579
Catalytic site (residue number reindexed from 1) R259 W268 N289 D296 D300 S396 I397 S398 R437 D440 T444 E448 Y517 D521 H523
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0010333 terpene synthase activity
GO:0016829 lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0006721 terpenoid metabolic process
GO:0016102 diterpenoid biosynthetic process
Cellular Component
GO:0009507 chloroplast

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2onh, PDBe:2onh, PDBj:2onh
PDBsum2onh
PubMed17372193
UniProtQ40322

[Back to BioLiP]