Structure of PDB 1wog Chain A Binding Site BS03

Receptor Information
>1wog Chain A (length=303) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAP
RALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITE
AARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTR
NDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTII
PMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYA
QGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFD
HVL
Ligand information
Ligand ID16D
InChIInChI=1S/C6H16N2/c7-5-3-1-2-4-6-8/h1-8H2
InChIKeyNAQMVNRVTILPCV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(CCCN)CCN
ACDLabs 10.04
CACTVS 3.341
NCCCCCCN
FormulaC6 H16 N2
NameHEXANE-1,6-DIAMINE;
1,6-DIAMINOHEXANE
ChEMBLCHEMBL303004
DrugBankDB03260
ZINCZINC000001543408
PDB chain1wog Chain A Residue 1401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1wog Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Resolution1.8 Å
Binding residue
(original residue number in PDB)
H145 D147 N159 S160
Binding residue
(residue number reindexed from 1)
H143 D145 N157 S158
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) H121 D143 H145 D147 N159 D229 D231 E274
Catalytic site (residue number reindexed from 1) H119 D141 H143 D145 N157 D227 D229 E272
Enzyme Commision number 3.5.3.11: agmatinase.
Gene Ontology
Molecular Function
GO:0008783 agmatinase activity
GO:0016787 hydrolase activity
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0046872 metal ion binding
Biological Process
GO:0033389 putrescine biosynthetic process from arginine, using agmatinase

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Molecular Function

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Biological Process
External links
PDB RCSB:1wog, PDBe:1wog, PDBj:1wog
PDBsum1wog
PubMed15355972
UniProtQ9RZ04

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