Structure of PDB 1wog Chain A Binding Site BS03
Receptor Information
>1wog Chain A (length=303) Species:
1299
(Deinococcus radiodurans) [
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GPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAP
RALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITE
AARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTR
NDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTII
PMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYA
QGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFD
HVL
Ligand information
Ligand ID
16D
InChI
InChI=1S/C6H16N2/c7-5-3-1-2-4-6-8/h1-8H2
InChIKey
NAQMVNRVTILPCV-UHFFFAOYSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
C(CCCN)CCN
ACDLabs 10.04
CACTVS 3.341
NCCCCCCN
Formula
C6 H16 N2
Name
HEXANE-1,6-DIAMINE;
1,6-DIAMINOHEXANE
ChEMBL
CHEMBL303004
DrugBank
DB03260
ZINC
ZINC000001543408
PDB chain
1wog Chain A Residue 1401 [
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Receptor-Ligand Complex Structure
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PDB
1wog
Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
H145 D147 N159 S160
Binding residue
(residue number reindexed from 1)
H143 D145 N157 S158
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
H121 D143 H145 D147 N159 D229 D231 E274
Catalytic site (residue number reindexed from 1)
H119 D141 H143 D145 N157 D227 D229 E272
Enzyme Commision number
3.5.3.11
: agmatinase.
Gene Ontology
Molecular Function
GO:0008783
agmatinase activity
GO:0016787
hydrolase activity
GO:0016813
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0046872
metal ion binding
Biological Process
GO:0033389
putrescine biosynthetic process from arginine, using agmatinase
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1wog
,
PDBe:1wog
,
PDBj:1wog
PDBsum
1wog
PubMed
15355972
UniProt
Q9RZ04
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