Structure of PDB 1p5w Chain A Binding Site BS03

Receptor Information
>1p5w Chain A (length=544) Species: 10788 (Canine parvovirus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVGISTGTFNNQTEFKFLENGWVEITANSSRLVHLNMPESENYRRVVVNN
MDKTAVRGNMALDDIHAQIVTPWSLVDANAWGVWFNPGDWQLIVNTMSEL
HLVSFEQEIFNVVLKTVSEPPTKVYNNDLTASLMVALDSNNTMPFTPAAM
RSETLGFYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNIYHGTDPDD
VQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLTHTWQTNRALGLPPF
LNSLPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSA
PYYSFEASTQGPFKTPIAAGRGGAQTDENQAADGNPRYAFGRQHGQKTTT
TGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPIGGKT
GINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVC
QNNCPGQLFVKVAPNLTNEYDPDASANMSRIVTYSDFWWKGKLVFKAKLR
ASHTWNPIQQMSINVDNQFNYVPSNIGGMKIVYEKSQLAPRKLY
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain1p5w Chain A Residue 586 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1p5w Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		D237 D239
Binding residue
(residue number reindexed from 1)		D197 D199
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:1p5w, PDBe:1p5w, PDBj:1p5w
PDBsum1p5w
PubMed14581558
UniProtP17455|CAPSD_PAVCD Capsid protein VP1

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