Structure of PDB 1f8v Chain A Binding Site BS03

Receptor Information
>1f8v Chain A (length=355) Species: 103782 (Pariacoto virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NRRNKARKVVSRSTALVPMAPASQRTGPAPRKPRKRNQALVRNPRLTDAG
LAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVFTPNTDTYI
VVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQNGLPAVNNY
SKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTAITPAPG
VFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKSTDFEWCDFV
RSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYKISTPTGAV
NTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNLKMRFPVAV
SSREN
Ligand information
>1f8v Chain E (length=21) Species: 103782 (Pariacoto virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
SKFWEGVLRVLNQISGTLSVI
Receptor-Ligand Complex Structure
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PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		P39 R40 R42 L46 V47 R48 P50
Binding residue
(residue number reindexed from 1)		P33 R34 R36 L40 V41 R42 P44
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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