Structure of PDB 1e3l Chain A Binding Site BS03

Receptor Information
>1e3l Chain A (length=376) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI
NATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRC
KLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSF
SQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCA
VFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPREL
DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV
DEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTH
ALPFESINDAIDLMKEGKSIRTILTF
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1e3l Chain A Residue 381 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1e3l Crystal Structure of Mouse Class II Alcohol Dehydrogenase Reveal Determinants of Substrate Specificity and Catalytic Efficiency
Resolution2.5 Å
Binding residue
(original residue number in PDB)		C97 C103 C111
Binding residue
(residue number reindexed from 1)		C97 C103 C111
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) C46 H47 T48 N51 H67 E68 C97 C100 C103 C111 R115 C178 S182 R371
Catalytic site (residue number reindexed from 1) C46 H47 T48 N51 H67 E68 C97 C100 C103 C111 R115 C178 S182 R371
Enzyme Commision number 1.1.1.105: all-trans-retinol dehydrogenase (NAD(+)).
Gene Ontology
Molecular Function
GO:0003960 NADPH:quinone reductase activity
GO:0004022 alcohol dehydrogenase (NAD+) activity
GO:0004032 aldose reductase (NADPH) activity
GO:0004745 all-trans-retinol dehydrogenase (NAD+) activity
GO:0005503 all-trans retinal binding
GO:0008270 zinc ion binding
GO:0016491 oxidoreductase activity
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0018479 benzaldehyde dehydrogenase (NAD+) activity
GO:0019841 retinol binding
GO:0046872 metal ion binding
GO:0051287 NAD binding
Biological Process
GO:0001523 retinoid metabolic process
GO:0006066 alcohol metabolic process
GO:0006067 ethanol metabolic process
GO:0006081 cellular aldehyde metabolic process
GO:0006629 lipid metabolic process
GO:0010430 fatty acid omega-oxidation
GO:0042572 retinol metabolic process
GO:0044282 small molecule catabolic process
GO:0046164 alcohol catabolic process
GO:1901661 quinone metabolic process
Cellular Component
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol

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Biological Process
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Cellular Component
External links
PDB RCSB:1e3l, PDBe:1e3l, PDBj:1e3l
PDBsum1e3l
PubMed10970744
UniProtQ9QYY9|ADH4_MOUSE All-trans-retinol dehydrogenase [NAD(+)] ADH4 (Gene Name=Adh4)

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