Structure of PDB 7oj7 Chain 111 Binding Site BS03

Receptor Information
>7oj7 Chain 111 (length=281) Species: 12089 (Coxsackievirus A24) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTAQSTPLTSGVNSQEVPALTAVETGASGQAVPSDVIETRHVVNYKTRSE
STLESFFGRSACVTILEVENFNATTDADRKKQFTTWAITYTDTVQLRRKL
EFFTYSRFDLEMTFVITERYYASNTGHARNQVYQLMYIPPGAPRPTAWDD
YTWQSSSNPSVFYTYGSAPPRMSIPYVGIANAYSHFYDGFARVPLKDETV
DSGDTYYGLVTINDFGTLAVRVVNEYNPARITSKIRVYMKPKHVRCWCPR
PPRAVPYRGEGVDFKQDSITPLTAVENINTF
Ligand information
Ligand ID0H0
InChIInChI=1S/C15H27NO9/c1-3-4-5-24-15(14(22)23)6-9(19)11(16-8(2)18)13(25-15)12(21)10(20)7-17/h9-13,17,19-21H,3-7H2,1-2H3,(H,16,18)(H,22,23)/t9-,10+,11+,12+,13+,15+/m0/s1
InChIKeyHDYHZAZYSDVKLZ-FSTWUICMSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O
OpenEye OEToolkits 2.0.7CCCCO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O
CACTVS 3.385CCCCO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CO)C(O)=O
OpenEye OEToolkits 2.0.7CCCCOC1(CC(C(C(O1)C(C(CO)O)O)NC(=O)C)O)C(=O)O
FormulaC15 H27 N O9
NameCarbohydrate component from a pentavalent N-acetylneuraminic acid conjugate;
(1R,2R)-1-[(2R,3R,4S,6R)-6-[bis(oxidanyl)methyl]-3-(1-hydroxyethylamino)-4-oxidanyl-6-propoxy-oxan-2-yl]propane-1,2,3-triol;
(2R,4S,5R,6R)-5-acetamido-2-butoxy-4-oxidanyl-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain7oj7 Chain 111 Residue 907 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7oj7 Exploring the Effect of Structure-Based Scaffold Hopping on the Inhibition of Coxsackievirus A24v Transduction by Pentavalent N-Acetylneuraminic Acid Conjugates.
Resolution1.78 Å
Binding residue
(original residue number in PDB)
Y725 A726 S727
Binding residue
(residue number reindexed from 1)
Y121 A122 S123
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.22.28: picornain 3C.
3.4.22.29: picornain 2A.
3.6.1.15: nucleoside-triphosphate phosphatase.
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity

View graph for
Molecular Function
External links
PDB RCSB:7oj7, PDBe:7oj7, PDBj:7oj7
PDBsum7oj7
PubMed34445134
UniProtV9VEF3

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