Structure of PDB 5it7 Chain 1 Binding Site BS03

Receptor Information
>5it7 Chain 1 (length=827) Species: 1177187 (Saccharomyces cerevisiae P283) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA
RFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID
SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV
VVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYP
ARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKT
KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLE
IVLKGEEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAE
QLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGT
VKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNII
GLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKL
VEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPL
KISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENG
IINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQ
YLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQ
IIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQV
VSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTL
GSDPLDPTSKAGEIVLAARKRHGMKEE
Ligand information
>5it7 Chain 4 (length=190) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaaaaugugaucuugcuuguaaauacaauuuugagagguuaauaaauuac
aaguagugcuauuuuuguauuuagguuagcuauuuagcuuuacguuccag
gaugccuaguggcagccccacaauauccaggaagcccucucuacgguuuu
ucagauuagguagucgaaaaaccuaagaaauuuaccugcu
<<<<<.........<<<<<<<<...........((((.........>>>>
>>>>.......>>>>>......<<<<.<<<<....>>>>.......[[.(
((.>>>>.<<<<.....>>>>....))).]].....)))).......<<<
<<.<<<.((((.>>>>>>>>.............))))...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5it7 Structural characterization of ribosome recruitment and translocation by type IV IRES.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		K578 K582 R585 D696
Binding residue
(residue number reindexed from 1)		K574 K578 R581 D692
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Dec 12 12:57:33 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5it7', asym_id = '1', bs = 'BS03', title = 'Structural characterization of ribosome recruitment and translocation by type IV IRES.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5it7', asym_id='1', bs='BS03', title='Structural characterization of ribosome recruitment and translocation by type IV IRES.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003924,0005525', uniprot = '', pdbid = '5it7', asym_id = '1'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003924,0005525', uniprot='', pdbid='5it7', asym_id='1')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>