Structure of PDB 8peg Chain v Binding Site BS02

Receptor Information

>8peg Chain v (length=110) Species: 562 (Escherichia coli)

METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKV
LESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRT
SHITVVVSDR

Ligand information

>8peg Chain p (length=18) Species: 562 (Escherichia coli)

AAAAAAAAAAAAATASFV

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8peg Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM.
• Resolution: 3.3 Å
• Binding residue (original residue number in PDB): I85 R92 R95
• Binding residue (residue number reindexed from 1): I85 R92 R95

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding
• GO:0019843 rRNA binding
• GO:0070180 large ribosomal subunit rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation
• GO:0042255 ribosome assembly
• GO:0042256 cytosolic ribosome assembly
• GO:0046677 response to antibiotic
• GO:1902626 assembly of large subunit precursor of preribosome

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0015934 large ribosomal subunit
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8peg, PDBe:8peg, PDBj:8peg
• PDBsum: 8peg
• PubMed: 38409277
• UniProt: P61175|RL22_ECOLI Large ribosomal subunit protein uL22 (Gene Name=rplV)