Structure of PDB 5gak Chain s Binding Site BS02
Receptor Information
>5gak Chain s (length=220) Species:
4932
(Saccharomyces cerevisiae) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
ARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVH
LVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINK
MLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEG
LRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLS
KKGSLENNIREFPEYFAAQA
Ligand information
>5gak Chain 3 (length=121) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
gguugcggccauaucuaccagaaagcaccguuucccguccgaucaacugu
aguuaagcugguaagagccugaccgaguaguguagugggugaccauacgc
gaaacucaggugcugcaaucu
<<<<<<<<<....<<<<<<<<....<<<.<<<............>>>...
.>>...>>>>>>>.>><<<<<<.......<<<<<..<<....>>.>>>>>
.....>>>>>>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5gak
Structure of the hypusinylated eukaryotic translation factor eIF-5A bound to the ribosome.
Resolution
3.88 Å
Binding residue
(original residue number in PDB)
E55 K201 K202 G203 L205
Binding residue
(residue number reindexed from 1)
E55 K201 K202 G203 L205
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003735
structural constituent of ribosome
GO:0005515
protein binding
Biological Process
GO:0000027
ribosomal large subunit assembly
GO:0002181
cytoplasmic translation
GO:0006412
translation
GO:0006415
translational termination
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005840
ribosome
GO:0022625
cytosolic large ribosomal subunit
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:5gak
,
PDBe:5gak
,
PDBj:5gak
PDBsum
5gak
PubMed
26715760
UniProt
P41805
|RL10_YEAST Large ribosomal subunit protein uL16 (Gene Name=RPL10)
[
Back to BioLiP
]